/EXTERNAL DEEP/mapping_coverage/K006051_K006052_K006053_K006054_K006122_5_lane_gembs
BACK
SAMPLE K006051_K006052_K006053_K006054_K006122_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1131982482 |
100% |
108800124307 |
100% |
| Mapped |
1122069235 |
99.12 % |
107810772508 |
99.09 % |
| Passed |
881346729 |
77.86 % |
83788248816 |
77.01 % |
| NotPassed |
240722506 |
21.27 % |
24022523692 |
22.08 % |
| |
|
|
|
|
| LowMAPQ |
188715796 |
16.67 % |
18831061563 |
17.31 % |
| MateUnmapped |
9913247 |
0.88 % |
988812127 |
0.91 % |
| Duplicate |
20920482 |
1.85 % |
2091458765 |
1.92 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
15094 |
0.00 % |
1507636 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31071134 |
2.74 % |
3098495728 |
2.85 % |
| Unmapped |
9913247 |
0.88 % |
989351799 |
0.91 % |
Base Level Counts
| Bases |
# |
% |
| Total |
87838328797 |
100% |
| Passed |
78483793246 |
89.35 % |
| Trimmed |
4194561757 |
4.78 % |
| Clipped |
266294235 |
0.30 % |
| Overlapping |
3783785746 |
4.31 % |
| LowQuality |
1109893813 |
1.26 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |