/EXTERNAL DEEP/methylation/K006051_K006052_K006053_K006054_K006122_5_lane_gembs
BACK
SAMPLE K006051_K006052_K006053_K006054_K006122_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26642597 |
22180650 |
83.25 % |
| NonRefCpG |
297524 |
182285 |
61.27 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7098525 |
13.54 % |
5141464 |
10.95 % |
88055 |
16.11 % |
32958 |
8.26 % |
| Intermediate (0.3-0.7) |
12227655 |
23.32 % |
10469572 |
22.30 % |
149576 |
27.36 % |
99226 |
24.85 % |
| Methylated (0.7-1) |
33109626 |
63.14 % |
31344669 |
66.75 % |
308980 |
56.53 % |
267035 |
66.89 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.790 |
|
0.810 |
|
0.750 |
|
0.810 |
|