/EXTERNAL DEEP/K006055_K006056_K006123_K006124_K006125_5_lane_gembs/41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422691.41

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SAMPLE K006055_K006056_K006123_K006124_K006125_5_lane_gembs LANE 41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422691.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	325562776	100.00 %	162781388	100.00 %	162781388	100.00 %
General Reads	313855606	96.40 %	158131425	97.14 %	155724181	95.66 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1556465	0.48 %	786951	0.48 %	769514	0.47 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	10150705	3.12 %	3863012	2.37 %	6287693	3.86 %
Bisulfite_reads C2T	160363077	49.26 %	80773882	49.62 %	79589195	48.89 %
Bisulfite_reads G2A	155048994	47.62 %	78144494	48.01 %	76904500	47.24 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	102424565
Average Unique	62.92 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	11951392291	36.35 %	4652666280	28.30 %	7298726011	44.39 %
Base Counts Overall C	4423963414	13.45 %	519726630	3.16 %	3904236784	23.75 %
Base Counts Overall G	4665149895	14.19 %	4032820266	24.53 %	632329629	3.85 %
Base Counts Overall T	11506368795	34.99 %	7068704954	42.99 %	4437663841	26.99 %
Base Counts Overall N	334965981	1.02 %	167002058	1.02 %	167963923	1.02 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9762585443490895
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	119825547

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	162781388
100	162781388

Insert Size Plot

Insert Size Histogram