/EXTERNAL DEEP/K006055_K006056_K006123_K006124_K006125_5_lane_gembs/41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422692.41

BACK

SAMPLE K006055_K006056_K006123_K006124_K006125_5_lane_gembs LANE 41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422692.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	396414034	100.00 %	198207017	100.00 %	198207017	100.00 %
General Reads	381786644	96.31 %	191982366	96.86 %	189804278	95.76 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1880202	0.47 %	949100	0.48 %	931102	0.47 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	12747188	3.22 %	5275551	2.66 %	7471637	3.77 %
Bisulfite_reads C2T	194986545	49.19 %	98020308	49.45 %	96966237	48.92 %
Bisulfite_reads G2A	188680301	47.60 %	94911158	47.88 %	93769143	47.31 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	121855089
Average Unique	61.48 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	14506045209	36.23 %	5629659546	28.12 %	8876385663	44.34 %
Base Counts Overall C	5418470055	13.53 %	684605277	3.42 %	4733864778	23.65 %
Base Counts Overall G	5766433891	14.40 %	4913708833	24.55 %	852725058	4.26 %
Base Counts Overall T	13942928039	34.82 %	8590950421	42.91 %	5351977618	26.73 %
Base Counts Overall N	403940240	1.01 %	199984640	1.00 %	203955600	1.02 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9740769021950745
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	142831617

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	198207017
100	198207017

Insert Size Plot

Insert Size Histogram