/EXTERNAL DEEP/K006055_K006056_K006123_K006124_K006125_5_lane_gembs/41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422694.41

BACK

SAMPLE K006055_K006056_K006123_K006124_K006125_5_lane_gembs LANE 41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422694.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 172525006 100.00 % 86262503 100.00 % 86262503 100.00 %
General Reads 171063030 99.15 % 85611550 99.25 % 85451480 99.06 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9 0.00 % 4 0.00 % 5 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 1461967 0.85 % 650949 0.75 % 811018 0.94 %
Bisulfite_reads C2T 87028955 50.44 % 43550869 50.49 % 43478086 50.40 %
Bisulfite_reads G2A 84034084 48.71 % 42060685 48.76 % 41973399 48.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 71945731
Average Unique 83.40 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 6558408505 38.99 % 2456645724 30.30 % 4101762781 47.08 %
Base Counts Overall C 1892317148 11.25 % 58550815 0.72 % 1833766333 21.05 %
Base Counts Overall G 1774807314 10.55 % 1717967093 21.19 % 56840221 0.65 %
Base Counts Overall T 6419932064 38.17 % 3788042788 46.72 % 2631889276 30.21 %
Base Counts Overall N 175723054 1.04 % 87468862 1.08 % 88254192 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 82848919



Mapping Quality

Mapping Quality Histogram
41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422694.41.mapq.png



Read Length

Read Length Reads
93 86262503
100 86262503



Insert Size Plot

Insert Size Histogram
41_Hf02.Bisulfite-Seq.DNA_methylation.EGAX00001422694.41.isize.png