/EXTERNAL DEEP/methylation/K006055_K006056_K006123_K006124_K006125_5_lane_gembs
BACK
SAMPLE K006055_K006056_K006123_K006124_K006125_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26139902 |
19649671 |
75.17 % |
| NonRefCpG |
315405 |
149288 |
47.33 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
8310557 |
16.22 % |
6193476 |
14.17 % |
135383 |
23.43 % |
51555 |
13.71 % |
| Intermediate (0.3-0.7) |
13619578 |
26.58 % |
10861056 |
24.84 % |
173984 |
30.11 % |
107654 |
28.63 % |
| Methylated (0.7-1) |
29309739 |
57.20 % |
26666317 |
60.99 % |
268395 |
46.45 % |
216834 |
57.66 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.760 |
|
0.780 |
|
0.660 |
|
0.760 |
|