/EXTERNAL DEEP/K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs/41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422701.41

BACK

SAMPLE K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs LANE 41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422701.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	159877146	100.00 %	79938573	100.00 %	79938573	100.00 %
General Reads	153751191	96.17 %	77139530	96.50 %	76611661	95.84 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	33722	0.02 %	16937	0.02 %	16785	0.02 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	6092233	3.81 %	2782106	3.48 %	3310127	4.14 %
Bisulfite_reads C2T	79781352	49.90 %	40007732	50.05 %	39773620	49.76 %
Bisulfite_reads G2A	74003561	46.29 %	37148735	46.47 %	36854826	46.10 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	58134987
Average Unique	72.72 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	5994211020	37.12 %	2645774735	32.77 %	3348436285	41.47 %
Base Counts Overall C	2014064654	12.47 %	134610168	1.67 %	1879454486	23.28 %
Base Counts Overall G	2048352842	12.69 %	1924538294	23.84 %	123814548	1.53 %
Base Counts Overall T	5929824084	36.72 %	3288164871	40.73 %	2641659213	32.72 %
Base Counts Overall N	161139146	1.00 %	80707805	1.00 %	80431341	1.00 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9929507778411404
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	72400034

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	79938573
100	79938573

Insert Size Plot

Insert Size Histogram