/EXTERNAL DEEP/K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs/41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422708.41

BACK

SAMPLE K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs LANE 41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422708.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	197996424	100.00 %	98998212	100.00 %	98998212	100.00 %
General Reads	195652980	98.82 %	97981260	98.97 %	97671720	98.66 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	43060	0.02 %	21603	0.02 %	21457	0.02 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	2300384	1.16 %	995349	1.01 %	1305035	1.32 %
Bisulfite_reads C2T	101549107	51.29 %	50845677	51.36 %	50703430	51.22 %
Bisulfite_reads G2A	94146933	47.55 %	47157186	47.63 %	46989747	47.47 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	75398110
Average Unique	76.16 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	7441987270	37.21 %	3250237386	32.51 %	4191749884	41.92 %
Base Counts Overall C	2424731937	12.13 %	101074852	1.01 %	2323657085	23.24 %
Base Counts Overall G	2450913441	12.26 %	2354871135	23.55 %	96042306	0.96 %
Base Counts Overall T	7394200400	36.98 %	4107584651	41.08 %	3286615749	32.87 %
Base Counts Overall N	285805776	1.43 %	185051388	1.85 %	100754388	1.01 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9952196307676433
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	92599680

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	98998212
100	98998212

Insert Size Plot

Insert Size Histogram