/EXTERNAL DEEP/K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs/41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422717.41

BACK

SAMPLE K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs LANE 41_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001422717.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	191060918	100.00 %	95530459	100.00 %	95530459	100.00 %
General Reads	182768070	95.66 %	91826062	96.12 %	90942008	95.20 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	483	0.00 %	251	0.00 %	232	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	8292365	4.34 %	3704146	3.88 %	4588219	4.80 %
Bisulfite_reads C2T	93667649	49.03 %	47046150	49.25 %	46621499	48.80 %
Bisulfite_reads G2A	89100904	46.63 %	44780163	46.88 %	44320741	46.39 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	56939474
Average Unique	59.60 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	6723408286	34.84 %	2633727341	27.30 %	4089680945	42.39 %
Base Counts Overall C	2863287366	14.84 %	456865633	4.74 %	2406421733	24.94 %
Base Counts Overall G	3037407542	15.74 %	2507744815	25.99 %	529662727	5.49 %
Base Counts Overall T	6469332212	33.52 %	3954475231	40.99 %	2514856981	26.06 %
Base Counts Overall N	203717312	1.06 %	95763339	0.99 %	107953973	1.12 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.044251215116836974
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	69081075

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	95530459
100	95530459

Insert Size Plot

Insert Size Histogram