/EXTERNAL DEEP/mapping_coverage/K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs
BACK
SAMPLE K006057_K006058_K006059_K006060_K006061_K006062_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1020029197 |
100% |
97019100230 |
100% |
| Mapped |
1011125731 |
99.13 % |
96128753630 |
99.08 % |
| Passed |
696068562 |
68.24 % |
64623036730 |
66.61 % |
| NotPassed |
315057169 |
30.89 % |
31505716900 |
32.47 % |
| |
|
|
|
|
| LowMAPQ |
243118444 |
23.83 % |
24311844400 |
25.06 % |
| MateUnmapped |
8903466 |
0.87 % |
890346600 |
0.92 % |
| Duplicate |
35116173 |
3.44 % |
3511617300 |
3.62 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
58810 |
0.01 % |
5881000 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
36763742 |
3.60 % |
3676374200 |
3.79 % |
| Unmapped |
8903466 |
0.87 % |
890346600 |
0.92 % |
Base Level Counts
| Bases |
# |
% |
| Total |
69581133800 |
100% |
| Passed |
60575960176 |
87.06 % |
| Trimmed |
3247427999 |
4.67 % |
| Clipped |
178188388 |
0.26 % |
| Overlapping |
4779908682 |
6.87 % |
| LowQuality |
799648555 |
1.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |