/EXTERNAL DEEP/K006063_K006064_K006065_K006066_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422808.43

BACK

SAMPLE K006063_K006064_K006065_K006066_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422808.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 397508396 100.00 % 198754198 100.00 % 198754198 100.00 %
General Reads 384869465 96.82 % 193525151 97.37 % 191344314 96.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4249330 1.07 % 2144206 1.08 % 2105124 1.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8389601 2.11 % 3084841 1.55 % 5304760 2.67 %
Bisulfite_reads C2T 200483115 50.43 % 100789842 50.71 % 99693273 50.16 %
Bisulfite_reads G2A 188635680 47.45 % 94879515 47.74 % 93756165 47.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 136668778
Average Unique 68.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14683020193 36.57 % 5603545564 27.91 % 9079474629 45.23 %
Base Counts Overall C 5277184205 13.14 % 523870757 2.61 % 4753313448 23.68 %
Base Counts Overall G 5564793122 13.86 % 4936983810 24.59 % 627809312 3.13 %
Base Counts Overall T 14146529162 35.24 % 8810544490 43.89 % 5335984672 26.58 %
Base Counts Overall N 476821314 1.19 % 199229377 0.99 % 277591937 1.38 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9832232806805701
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 159976390



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422808.43.mapq.png



Read Length

Read Length Reads
100 198754198
100 198754198



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422808.43.isize.png