/EXTERNAL DEEP/K006063_K006064_K006065_K006066_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422809.43

BACK

SAMPLE K006063_K006064_K006065_K006066_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422809.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 369167578 100.00 % 184583789 100.00 % 184583789 100.00 %
General Reads 363069389 98.35 % 182494373 98.87 % 180575016 97.83 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1597097 0.43 % 803353 0.44 % 793744 0.43 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4501092 1.22 % 1286063 0.70 % 3215029 1.74 %
Bisulfite_reads C2T 187134292 50.69 % 94050856 50.95 % 93083436 50.43 %
Bisulfite_reads G2A 177532194 48.09 % 89246870 48.35 % 88285324 47.83 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 153145955
Average Unique 82.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14726955220 39.50 % 5995502306 32.16 % 8731452914 46.84 %
Base Counts Overall C 3733466807 10.01 % 169068986 0.91 % 3564397821 19.12 %
Base Counts Overall G 3799077472 10.19 % 3637039928 19.51 % 162037544 0.87 %
Base Counts Overall T 14583245520 39.11 % 8656585070 46.43 % 5926660450 31.79 %
Base Counts Overall N 443180359 1.19 % 184766399 0.99 % 258413960 1.39 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9912890038983048
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 174934955



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422809.43.mapq.png



Read Length

Read Length Reads
100 184583789
100 184583789



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422809.43.isize.png