/EXTERNAL DEEP/K006063_K006064_K006065_K006066_4_lane_gembs/43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422810.43

BACK

SAMPLE K006063_K006064_K006065_K006066_4_lane_gembs LANE 43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422810.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 367655244 100.00 % 183827622 100.00 % 183827622 100.00 %
General Reads 361366105 98.29 % 181560706 98.77 % 179805399 97.81 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1589875 0.43 % 799670 0.44 % 790205 0.43 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4699264 1.28 % 1467246 0.80 % 3232018 1.76 %
Bisulfite_reads C2T 186272627 50.67 % 93579470 50.91 % 92693157 50.42 %
Bisulfite_reads G2A 176683353 48.06 % 88780906 48.30 % 87902447 47.82 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 152551163
Average Unique 82.99 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14664041144 39.49 % 5959498333 32.10 % 8704542811 46.88 %
Base Counts Overall C 3722335739 10.02 % 172863204 0.93 % 3549472535 19.12 %
Base Counts Overall G 3778935258 10.18 % 3617183672 19.48 % 161751586 0.87 %
Base Counts Overall T 14507186191 39.07 % 8603482242 46.34 % 5903703949 31.80 %
Base Counts Overall N 460681312 1.24 % 213562371 1.15 % 247118941 1.33 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9905750445325391
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 174029227



Mapping Quality

Mapping Quality Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422810.43.mapq.png



Read Length

Read Length Reads
100 183827622
100 183827622



Insert Size Plot

Insert Size Histogram
43_Hm03.Bisulfite-Seq.DNA_methylation.EGAX00001422810.43.isize.png