/EXTERNAL DEEP/mapping_coverage/K006063_K006064_K006065_K006066_4_lane_gembs
BACK
SAMPLE K006063_K006064_K006065_K006066_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1405492786 |
100% |
132066893645 |
100% |
| Mapped |
1392272341 |
99.06 % |
130744849145 |
99.00 % |
| Passed |
1070866742 |
76.19 % |
98604289245 |
74.66 % |
| NotPassed |
321405599 |
22.87 % |
32140559900 |
24.34 % |
| |
|
|
|
|
| LowMAPQ |
228174772 |
16.23 % |
22817477200 |
17.28 % |
| MateUnmapped |
13220445 |
0.94 % |
1322044500 |
1.00 % |
| Duplicate |
53477489 |
3.80 % |
5347748900 |
4.05 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
22174 |
0.00 % |
2217400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
39731164 |
2.83 % |
3973116400 |
3.01 % |
| Unmapped |
13220445 |
0.94 % |
1322044500 |
1.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107061036700 |
100% |
| Passed |
91776672426 |
85.72 % |
| Trimmed |
4913275506 |
4.59 % |
| Clipped |
197102897 |
0.18 % |
| Overlapping |
8259644558 |
7.71 % |
| LowQuality |
1914341313 |
1.79 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |