/EXTERNAL DEEP/methylation/K006063_K006064_K006065_K006066_4_lane_gembs
BACK
SAMPLE K006063_K006064_K006065_K006066_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26793782 |
22327050 |
83.33 % |
| NonRefCpG |
287510 |
193622 |
67.34 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5530083 |
10.53 % |
3132170 |
6.70 % |
56740 |
10.66 % |
17675 |
4.28 % |
| Intermediate (0.3-0.7) |
7385132 |
14.06 % |
5878287 |
12.57 % |
90585 |
17.02 % |
52948 |
12.82 % |
| Methylated (0.7-1) |
39616912 |
75.41 % |
37771718 |
80.74 % |
384795 |
72.31 % |
342449 |
82.90 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.880 |
|
0.850 |
|
0.880 |
|