/EXTERNAL DEEP/K006075_K006076_K006077_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422883.43

BACK

SAMPLE K006075_K006076_K006077_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422883.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 370513020 100.00 % 185256510 100.00 % 185256510 100.00 %
General Reads 366164035 98.83 % 183493950 99.05 % 182670085 98.60 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1181123 0.32 % 591990 0.32 % 589133 0.32 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3167862 0.85 % 1170570 0.63 % 1997292 1.08 %
Bisulfite_reads C2T 188554570 50.89 % 94480482 51.00 % 94074088 50.78 %
Bisulfite_reads G2A 178790588 48.25 % 89605458 48.37 % 89185130 48.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 156965562
Average Unique 84.73 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14753189976 39.42 % 6278769515 33.56 % 8474420461 45.29 %
Base Counts Overall C 3758317940 10.04 % 149987036 0.80 % 3608330904 19.28 %
Base Counts Overall G 3767406261 10.07 % 3626984335 19.38 % 140421926 0.75 %
Base Counts Overall T 14764251179 39.45 % 8469762515 45.27 % 6294488664 33.64 %
Base Counts Overall N 378649664 1.01 % 185404109 0.99 % 193245555 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.995253064956093
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 178261831



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422883.43.mapq.png



Read Length

Read Length Reads
100 185256510
100 185256510



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422883.43.isize.png