/EXTERNAL DEEP/K006075_K006076_K006077_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422884.43

BACK

SAMPLE K006075_K006076_K006077_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422884.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 402239784 100.00 % 201119892 100.00 % 201119892 100.00 %
General Reads 386491652 96.08 % 194417360 96.67 % 192074292 95.50 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6113093 1.52 % 3096958 1.54 % 3016135 1.50 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9635039 2.40 % 3605574 1.79 % 6029465 3.00 %
Bisulfite_reads C2T 202287687 50.29 % 101740769 50.59 % 100546918 49.99 %
Bisulfite_reads G2A 190317058 47.31 % 95773549 47.62 % 94543509 47.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 132118420
Average Unique 65.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14673215043 36.12 % 5704646337 28.08 % 8968568706 44.15 %
Base Counts Overall C 5444172959 13.40 % 604815959 2.98 % 4839357000 23.82 %
Base Counts Overall G 5775192795 14.22 % 5041990297 24.82 % 733202498 3.61 %
Base Counts Overall T 14183719445 34.91 % 8760454005 43.13 % 5423265440 26.70 %
Base Counts Overall N 549917942 1.35 % 201202494 0.99 % 348715448 1.72 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9770039356504833
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 154624766



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422884.43.mapq.png



Read Length

Read Length Reads
100 201119892
100 201119892



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422884.43.isize.png