/EXTERNAL DEEP/K006075_K006076_K006077_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422885.43

BACK

SAMPLE K006075_K006076_K006077_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422885.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 382005958 100.00 % 191002979 100.00 % 191002979 100.00 %
General Reads 376147986 98.47 % 189172243 99.04 % 186975743 97.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1208564 0.32 % 608114 0.32 % 600450 0.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4649408 1.22 % 1222622 0.64 % 3426786 1.79 %
Bisulfite_reads C2T 193671448 50.70 % 97385234 50.99 % 96286214 50.41 %
Bisulfite_reads G2A 183685102 48.08 % 92395123 48.37 % 91289979 47.80 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 160874296
Average Unique 84.23 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15154444607 39.28 % 6455551764 33.46 % 8698892843 45.09 %
Base Counts Overall C 3819308468 9.90 % 151379860 0.78 % 3667928608 19.01 %
Base Counts Overall G 3899604972 10.11 % 3756010275 19.47 % 143594697 0.74 %
Base Counts Overall T 15158809948 39.29 % 8708152977 45.14 % 6450656971 33.44 %
Base Counts Overall N 550433763 1.43 % 220206003 1.14 % 330227760 1.71 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9951095798163205
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 182526944



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422885.43.mapq.png



Read Length

Read Length Reads
100 191002979
100 191002979



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422885.43.isize.png