/EXTERNAL DEEP/K006075_K006076_K006077_3_lane_gembs

BACK

SAMPLE K006075_K006076_K006077_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1154758762 100.00 % 577379381 100.00 % 577379381 100.00 %
General Reads 1128803673 97.75 % 567083553 98.22 % 561720120 97.29 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8502780 0.74 % 4297062 0.74 % 4205718 0.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17452309 1.51 % 5998766 1.04 % 11453543 1.98 %
Bisulfite_reads C2T 584513705 50.62 % 293606485 50.85 % 290907220 50.38 %
Bisulfite_reads G2A 552792748 47.87 % 277774130 48.11 % 275018618 47.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 449958278
Average Unique 77.93 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44580849626 38.22 % 18438967616 31.62 % 26141882010 44.83 %
Base Counts Overall C 13021799367 11.16 % 906182855 1.55 % 12115616512 20.78 %
Base Counts Overall G 13442204028 11.53 % 12424984907 21.31 % 1017219121 1.74 %
Base Counts Overall T 44106780572 37.82 % 25938369497 44.48 % 18168411075 31.16 %
Base Counts Overall N 1479001369 1.27 % 606812606 1.04 % 872188763 1.50 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9821145363198385
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 515413541



Mapping Quality

Mapping Quality Histogram
K006075_K006076_K006077_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006075_K006076_K006077_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422883.43
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422884.43
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422885.43