/EXTERNAL DEEP/mapping_coverage/K006075_K006076_K006077_3_lane_gembs
BACK
SAMPLE K006075_K006076_K006077_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1098802701 |
100% |
103141281061 |
100% |
| Mapped |
1087948648 |
99.01 % |
102055875761 |
98.95 % |
| Passed |
837580500 |
76.23 % |
77019060961 |
74.67 % |
| NotPassed |
250368148 |
22.79 % |
25036814800 |
24.27 % |
| |
|
|
|
|
| LowMAPQ |
192565524 |
17.53 % |
19256552400 |
18.67 % |
| MateUnmapped |
10854053 |
0.99 % |
1085405300 |
1.05 % |
| Duplicate |
30250856 |
2.75 % |
3025085600 |
2.93 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
27862 |
0.00 % |
2786200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
27523906 |
2.50 % |
2752390600 |
2.67 % |
| Unmapped |
10854053 |
0.99 % |
1085405300 |
1.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
83734241700 |
100% |
| Passed |
71820409021 |
85.77 % |
| Trimmed |
3816981461 |
4.56 % |
| Clipped |
194912469 |
0.23 % |
| Overlapping |
6520268270 |
7.79 % |
| LowQuality |
1381670479 |
1.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |