/EXTERNAL DEEP/methylation/K006075_K006076_K006077_3_lane_gembs
BACK
SAMPLE K006075_K006076_K006077_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26619264 |
20801869 |
78.15 % |
| NonRefCpG |
307171 |
176523 |
57.47 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5469241 |
10.59 % |
2721969 |
6.16 % |
85396 |
15.15 % |
23658 |
5.88 % |
| Intermediate (0.3-0.7) |
8007478 |
15.50 % |
5971407 |
13.51 % |
106722 |
18.93 % |
59132 |
14.71 % |
| Methylated (0.7-1) |
38170118 |
73.91 % |
35507625 |
80.33 % |
371678 |
65.92 % |
319239 |
79.41 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.830 |
|
0.880 |
|