/EXTERNAL DEEP/K006084_K006085_K006086_K006126_4_lane_gembs/51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423085.51

BACK

SAMPLE K006084_K006085_K006086_K006126_4_lane_gembs LANE 51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423085.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 287483220 100.00 % 143741610 100.00 % 143741610 100.00 %
General Reads 283629761 98.66 % 142310415 99.00 % 141319346 98.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4 0.00 % 2 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3853455 1.34 % 1431193 1.00 % 2422262 1.69 %
Bisulfite_reads C2T 144655810 50.32 % 72573398 50.49 % 72082412 50.15 %
Bisulfite_reads G2A 138973955 48.34 % 69737019 48.52 % 69236936 48.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 120302836
Average Unique 83.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11368969469 39.15 % 4486147651 30.90 % 6882821818 47.41 %
Base Counts Overall C 2990152764 10.30 % 115781761 0.80 % 2874371003 19.80 %
Base Counts Overall G 2988113344 10.29 % 2877678393 19.82 % 110434951 0.76 %
Base Counts Overall T 11341251664 39.06 % 6894227634 47.49 % 4447024030 30.63 %
Base Counts Overall N 347317979 1.20 % 144067171 0.99 % 203250808 1.40 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 137101138



Mapping Quality

Mapping Quality Histogram
51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423085.51.mapq.png



Read Length

Read Length Reads
100 143741610
100 143741610



Insert Size Plot

Insert Size Histogram
51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423085.51.isize.png