/EXTERNAL DEEP/K006084_K006085_K006086_K006126_4_lane_gembs/51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423094.51

BACK

SAMPLE K006084_K006085_K006086_K006126_4_lane_gembs LANE 51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423094.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 313776842 100.00 % 156888421 100.00 % 156888421 100.00 %
General Reads 309036199 98.49 % 154663176 98.58 % 154373023 98.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4740643 1.51 % 2225245 1.42 % 2515398 1.60 %
Bisulfite_reads C2T 157872899 50.31 % 79008433 50.36 % 78864466 50.27 %
Bisulfite_reads G2A 151163300 48.18 % 75654743 48.22 % 75508557 48.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 130345195
Average Unique 83.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12000836100 39.23 % 4503852810 30.54 % 7496983290 47.31 %
Base Counts Overall C 3373659974 11.03 % 134125215 0.91 % 3239534759 20.44 %
Base Counts Overall G 3139607761 10.26 % 3013999717 20.44 % 125608044 0.79 %
Base Counts Overall T 11759895207 38.44 % 6936470191 47.03 % 4823425016 30.44 %
Base Counts Overall N 319243053 1.04 % 159063641 1.08 % 160179412 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 149675330



Mapping Quality

Mapping Quality Histogram
51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423094.51.mapq.png



Read Length

Read Length Reads
93 156888421
100 156888421



Insert Size Plot

Insert Size Histogram
51_Hf01.Bisulfite-Seq.DNA_methylation.EGAX00001423094.51.isize.png