/EXTERNAL DEEP/mapping_coverage/K006084_K006085_K006086_K006126_4_lane_gembs
BACK
SAMPLE K006084_K006085_K006086_K006126_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1180628794 |
100% |
116078150478 |
100% |
| Mapped |
1171599987 |
99.24 % |
115182002287 |
99.23 % |
| Passed |
994894577 |
84.27 % |
97672875568 |
84.14 % |
| NotPassed |
176705410 |
14.97 % |
17509126719 |
15.08 % |
| |
|
|
|
|
| LowMAPQ |
142142536 |
12.04 % |
14079720194 |
12.13 % |
| MateUnmapped |
9028807 |
0.76 % |
894117120 |
0.77 % |
| Duplicate |
7606222 |
0.64 % |
757063491 |
0.65 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
4098 |
0.00 % |
405544 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
26952554 |
2.28 % |
2671937490 |
2.30 % |
| Unmapped |
9028807 |
0.76 % |
896148191 |
0.77 % |
Base Level Counts
| Bases |
# |
% |
| Total |
98555085215 |
100% |
| Passed |
91361646511 |
92.70 % |
| Trimmed |
4876326687 |
4.95 % |
| Clipped |
211710388 |
0.21 % |
| Overlapping |
670499259 |
0.68 % |
| LowQuality |
1434902370 |
1.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |