/EXTERNAL DEEP/methylation/K006084_K006085_K006086_K006126_4_lane_gembs
BACK
SAMPLE K006084_K006085_K006086_K006126_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26444726 |
21658985 |
81.90 % |
| NonRefCpG |
188522 |
89417 |
47.43 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6438995 |
12.37 % |
4114657 |
8.99 % |
66177 |
19.69 % |
16390 |
7.91 % |
| Intermediate (0.3-0.7) |
12559177 |
24.13 % |
10589680 |
23.15 % |
97438 |
29.00 % |
53302 |
25.71 % |
| Methylated (0.7-1) |
33048320 |
63.50 % |
31042096 |
67.86 % |
172427 |
51.31 % |
137620 |
66.38 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.790 |
|
0.810 |
|
0.710 |
|
0.800 |
|