/EXTERNAL DEEP/K006087_K006088_K006089_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423129.51

BACK

SAMPLE K006087_K006088_K006089_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423129.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 358094356 100.00 % 179047178 100.00 % 179047178 100.00 %
General Reads 354315458 98.94 % 177827334 99.32 % 176488124 98.57 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 30 0.00 % 18 0.00 % 12 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3778868 1.06 % 1219826 0.68 % 2559042 1.43 %
Bisulfite_reads C2T 185145556 51.70 % 92892871 51.88 % 92252685 51.52 %
Bisulfite_reads G2A 169169932 47.24 % 84934481 47.44 % 84235451 47.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 132587515
Average Unique 74.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13440513267 37.16 % 5789780393 32.02 % 7650732874 42.31 %
Base Counts Overall C 4521515562 12.50 % 209398519 1.16 % 4312117043 23.85 %
Base Counts Overall G 4548547769 12.58 % 4358814803 24.10 % 189732966 1.05 %
Base Counts Overall T 13293852945 36.76 % 7545956802 41.73 % 5747896143 31.78 %
Base Counts Overall N 363100413 1.00 % 179814461 0.99 % 183285952 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 166181684



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423129.51.mapq.png



Read Length

Read Length Reads
100 179047178
100 179047178



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423129.51.isize.png