/EXTERNAL DEEP/mapping_coverage/K006087_K006088_K006089_3_lane_gembs
BACK
SAMPLE K006087_K006088_K006089_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1040260146 |
100% |
98159191732 |
100% |
| Mapped |
1029104071 |
98.93 % |
97043584232 |
98.86 % |
| Passed |
720606450 |
69.27 % |
66193822132 |
67.44 % |
| NotPassed |
308497621 |
29.66 % |
30849762100 |
31.43 % |
| |
|
|
|
|
| LowMAPQ |
248129088 |
23.85 % |
24812908800 |
25.28 % |
| MateUnmapped |
11156075 |
1.07 % |
1115607500 |
1.14 % |
| Duplicate |
16698552 |
1.61 % |
1669855200 |
1.70 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
99820 |
0.01 % |
9982000 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
43570161 |
4.19 % |
4357016100 |
4.44 % |
| Unmapped |
11156075 |
1.07 % |
1115607500 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72043476300 |
100% |
| Passed |
61880489353 |
85.89 % |
| Trimmed |
3301173049 |
4.58 % |
| Clipped |
224357243 |
0.31 % |
| Overlapping |
5625296925 |
7.81 % |
| LowQuality |
1012159730 |
1.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |