/EXTERNAL DEEP/methylation/K006087_K006088_K006089_3_lane_gembs
BACK
SAMPLE K006087_K006088_K006089_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26415410 |
19477199 |
73.73 % |
| NonRefCpG |
225551 |
81607 |
36.18 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6158379 |
11.99 % |
3621897 |
8.41 % |
98233 |
24.38 % |
25835 |
11.30 % |
| Intermediate (0.3-0.7) |
11691001 |
22.75 % |
8774206 |
20.37 % |
112680 |
27.96 % |
56671 |
24.80 % |
| Methylated (0.7-1) |
33529883 |
65.26 % |
30677776 |
71.22 % |
192040 |
47.66 % |
146048 |
63.90 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.810 |
|
0.840 |
|
0.670 |
|
0.800 |
|