/EXTERNAL DEEP/K006090_K006091_K006092_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423190.51

BACK

SAMPLE K006090_K006091_K006092_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423190.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 348075924 100.00 % 174037962 100.00 % 174037962 100.00 %
General Reads 344567699 98.99 % 172844719 99.31 % 171722980 98.67 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24 0.00 % 13 0.00 % 11 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3508201 1.01 % 1193230 0.69 % 2314971 1.33 %
Bisulfite_reads C2T 181574269 52.17 % 91050456 52.32 % 90523813 52.01 %
Bisulfite_reads G2A 162993454 46.83 % 81794276 47.00 % 81199178 46.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 125237636
Average Unique 71.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12956617221 36.85 % 5703361583 32.45 % 7253255638 41.26 %
Base Counts Overall C 4490271960 12.77 % 202931242 1.15 % 4287340718 24.39 %
Base Counts Overall G 4545805158 12.93 % 4359708862 24.80 % 186096296 1.06 %
Base Counts Overall T 12810240216 36.44 % 7137118019 40.60 % 5673122197 32.27 %
Base Counts Overall N 352733769 1.00 % 174714456 0.99 % 178019313 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 160741510



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423190.51.mapq.png



Read Length

Read Length Reads
100 174037962
100 174037962



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423190.51.isize.png