/EXTERNAL DEEP/K006090_K006091_K006092_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423191.51

BACK

SAMPLE K006090_K006091_K006092_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423191.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 361746946 100.00 % 180873473 100.00 % 180873473 100.00 %
General Reads 347293572 96.00 % 174736212 96.61 % 172557360 95.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3209646 0.89 % 1623001 0.90 % 1586645 0.88 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11243728 3.11 % 4514260 2.50 % 6729468 3.72 %
Bisulfite_reads C2T 179927986 49.74 % 90507596 50.04 % 89420390 49.44 %
Bisulfite_reads G2A 170575232 47.15 % 85851617 47.47 % 84723615 46.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 107149124
Average Unique 59.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13253614812 36.28 % 5100408355 27.92 % 8153206457 44.63 %
Base Counts Overall C 4926693694 13.48 % 607441622 3.33 % 4319252072 23.64 %
Base Counts Overall G 5253349262 14.38 % 4486148486 24.56 % 767200776 4.20 %
Base Counts Overall T 12736346284 34.86 % 7892788352 43.21 % 4843557932 26.51 %
Base Counts Overall N 366437494 1.00 % 181433958 0.99 % 185003536 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9773436007886449
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 126502098



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423191.51.mapq.png



Read Length

Read Length Reads
100 180873473
100 180873473



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423191.51.isize.png