/EXTERNAL DEEP/K006090_K006091_K006092_3_lane_gembs/51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423192.51

BACK

SAMPLE K006090_K006091_K006092_3_lane_gembs LANE 51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423192.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 347230874 100.00 % 173615437 100.00 % 173615437 100.00 %
General Reads 343612715 98.96 % 172371791 99.28 % 171240924 98.63 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 53 0.00 % 31 0.00 % 22 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3618106 1.04 % 1243615 0.72 % 2374491 1.37 %
Bisulfite_reads C2T 180987865 52.12 % 90761078 52.28 % 90226787 51.97 %
Bisulfite_reads G2A 162624903 46.83 % 81610744 47.01 % 81014159 46.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 125108732
Average Unique 72.06 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12947501153 36.92 % 5698308838 32.50 % 7249192315 41.34 %
Base Counts Overall C 4460658995 12.72 % 202377729 1.15 % 4258281266 24.28 %
Base Counts Overall G 4510661219 12.86 % 4325194014 24.67 % 185467205 1.06 %
Base Counts Overall T 12798431057 36.49 % 7133558980 40.68 % 5664872077 32.31 %
Base Counts Overall N 353065850 1.01 % 175719576 1.00 % 177346274 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 160243757



Mapping Quality

Mapping Quality Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423192.51.mapq.png



Read Length

Read Length Reads
100 173615437
100 173615437



Insert Size Plot

Insert Size Histogram
51_Hf03.Bisulfite-Seq.DNA_methylation.EGAX00001423192.51.isize.png