/EXTERNAL DEEP/mapping_coverage/K006096_K006097_K006098_K006099_4_lane_gembs
BACK
SAMPLE K006096_K006097_K006098_K006099_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1210067387 |
100% |
112742157545 |
100% |
| Mapped |
1183459666 |
97.80 % |
110081385445 |
97.64 % |
| Passed |
730053415 |
60.33 % |
64740760345 |
57.42 % |
| NotPassed |
453406251 |
37.47 % |
45340625100 |
40.22 % |
| |
|
|
|
|
| LowMAPQ |
328505674 |
27.15 % |
32850567400 |
29.14 % |
| MateUnmapped |
26607721 |
2.20 % |
2660772100 |
2.36 % |
| Duplicate |
81756705 |
6.76 % |
8175670500 |
7.25 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
64776 |
0.01 % |
6477600 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
43079096 |
3.56 % |
4307909600 |
3.82 % |
| Unmapped |
26607721 |
2.20 % |
2660772100 |
2.36 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72977066900 |
100% |
| Passed |
60625230349 |
83.07 % |
| Trimmed |
3260155604 |
4.47 % |
| Clipped |
347439220 |
0.48 % |
| Overlapping |
7888867335 |
10.81 % |
| LowQuality |
855374392 |
1.17 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |