/EXTERNAL DEEP/K006107_K006108_2_lane_gembs/51_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001423330.51

BACK

SAMPLE K006107_K006108_2_lane_gembs LANE 51_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001423330.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 263535134 100.00 % 131767567 100.00 % 131767567 100.00 %
General Reads 198436664 75.30 % 101575732 77.09 % 96860932 73.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 316912 0.12 % 163128 0.12 % 153784 0.12 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 64781558 24.58 % 30028707 22.79 % 34752851 26.37 %
Bisulfite_reads C2T 101535498 38.53 % 51977573 39.45 % 49557925 37.61 %
Bisulfite_reads G2A 97218078 36.89 % 49761287 37.76 % 47456791 36.02 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 77823936
Average Unique 59.06 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 9975732769 37.48 % 4432418072 33.31 % 5543314697 41.65 %
Base Counts Overall C 3664285770 13.77 % 760085442 5.71 % 2904200328 21.82 %
Base Counts Overall G 3347092542 12.57 % 2616073703 19.66 % 731018839 5.49 %
Base Counts Overall T 9352009220 35.14 % 5363385500 40.30 % 3988623720 29.97 %
Base Counts Overall N 277928233 1.04 % 136561550 1.03 % 141366683 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9884103961768974
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 89567674



Mapping Quality

Mapping Quality Histogram
51_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001423330.51.mapq.png



Read Length

Read Length Reads
100 131767567
100 131767567



Insert Size Plot

Insert Size Histogram
51_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001423330.51.isize.png