/EXTERNAL DEEP/mapping_coverage/K006107_K006108_2_lane_gembs
BACK
SAMPLE K006107_K006108_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
603682968 |
100% |
54682429644 |
100% |
| Mapped |
588148035 |
97.43 % |
53128936344 |
97.16 % |
| Passed |
410028997 |
67.92 % |
35317032544 |
64.59 % |
| NotPassed |
178119038 |
29.51 % |
17811903800 |
32.57 % |
| |
|
|
|
|
| LowMAPQ |
140453386 |
23.27 % |
14045338600 |
25.69 % |
| MateUnmapped |
15534933 |
2.57 % |
1553493300 |
2.84 % |
| Duplicate |
17152766 |
2.84 % |
1715276600 |
3.14 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
19174 |
0.00 % |
1917400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20493712 |
3.39 % |
2049371200 |
3.75 % |
| Unmapped |
15534933 |
2.57 % |
1553493300 |
2.84 % |
Base Level Counts
| Bases |
# |
% |
| Total |
40983559500 |
100% |
| Passed |
32793054149 |
80.02 % |
| Trimmed |
1801513482 |
4.40 % |
| Clipped |
198849250 |
0.49 % |
| Overlapping |
5467677706 |
13.34 % |
| LowQuality |
722464913 |
1.76 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |