/EXTERNAL DEEP/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs/51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423314.51

BACK

SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs LANE 51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423314.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 345590956 100.00 % 172795478 100.00 % 172795478 100.00 %
General Reads 333358888 96.46 % 167944456 97.19 % 165414432 95.73 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2680472 0.78 % 1355439 0.78 % 1325033 0.77 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9551596 2.76 % 3495583 2.02 % 6056013 3.50 %
Bisulfite_reads C2T 172902393 50.03 % 87086330 50.40 % 85816063 49.66 %
Bisulfite_reads G2A 163136967 47.21 % 82213565 47.58 % 80923402 46.83 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 120613926
Average Unique 69.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12570982152 36.02 % 5064039626 29.02 % 7506942526 43.01 %
Base Counts Overall C 4817333254 13.80 % 827291751 4.74 % 3990041503 22.86 %
Base Counts Overall G 4950867234 14.18 % 4097611347 23.48 % 853255887 4.89 %
Base Counts Overall T 12140541216 34.78 % 7286188205 41.75 % 4854353011 27.81 %
Base Counts Overall N 424962700 1.22 % 177212349 1.02 % 247750351 1.42 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9742756565494759
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 142806014



Mapping Quality

Mapping Quality Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423314.51.mapq.png



Read Length

Read Length Reads
100 172795478
100 172795478



Insert Size Plot

Insert Size Histogram
51_Hf07.Bisulfite-Seq.DNA_methylation.EGAX00001423314.51.isize.png