/EXTERNAL DEEP/mapping_coverage/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs
BACK
SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1254531790 |
100% |
122321812376 |
100% |
| Mapped |
1199528769 |
95.62 % |
116821510276 |
95.50 % |
| Passed |
654564722 |
52.18 % |
62325105576 |
50.95 % |
| NotPassed |
544964047 |
43.44 % |
54496404700 |
44.55 % |
| |
|
|
|
|
| LowMAPQ |
293705480 |
23.41 % |
29370548000 |
24.01 % |
| MateUnmapped |
55003021 |
4.38 % |
5500302100 |
4.50 % |
| Duplicate |
192590613 |
15.35 % |
19259061300 |
15.74 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
26164 |
0.00 % |
2616400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
58641790 |
4.67 % |
5864179000 |
4.79 % |
| Unmapped |
55003021 |
4.38 % |
5500302100 |
4.50 % |
Base Level Counts
| Bases |
# |
% |
| Total |
65421610900 |
100% |
| Passed |
58017186682 |
88.68 % |
| Trimmed |
3096643648 |
4.73 % |
| Clipped |
330403609 |
0.51 % |
| Overlapping |
2766101715 |
4.23 % |
| LowQuality |
1211275246 |
1.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |