/EXTERNAL DEEP/methylation/K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs
BACK
SAMPLE K006109_K006110_K006111_K006112_K006113_K006114_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26134528 |
17119180 |
65.50 % |
| NonRefCpG |
227847 |
74478 |
32.69 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6241483 |
12.32 % |
2989561 |
7.61 % |
97949 |
23.97 % |
25781 |
11.77 % |
| Intermediate (0.3-0.7) |
13238657 |
26.13 % |
9128609 |
23.23 % |
121557 |
29.74 % |
58899 |
26.90 % |
| Methylated (0.7-1) |
31183529 |
61.55 % |
27185176 |
69.17 % |
189192 |
46.29 % |
134298 |
61.33 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.820 |
|
0.660 |
|
0.780 |
|