/EXTERNAL DEEP/K006119_K006120_K006121_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422975.43

BACK

SAMPLE K006119_K006120_K006121_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422975.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 382588554 100.00 % 191294277 100.00 % 191294277 100.00 %
General Reads 376484247 98.40 % 189483461 99.05 % 187000786 97.76 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1203995 0.31 % 606668 0.32 % 597327 0.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4900312 1.28 % 1204148 0.63 % 3696164 1.93 %
Bisulfite_reads C2T 193763420 50.65 % 97504180 50.97 % 96259240 50.32 %
Bisulfite_reads G2A 183924822 48.07 % 92585949 48.40 % 91338873 47.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 160231918
Average Unique 83.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15211676416 39.37 % 6372118717 32.98 % 8839557699 45.75 %
Base Counts Overall C 3808600245 9.86 % 151889268 0.79 % 3656710977 18.93 %
Base Counts Overall G 3902814936 10.10 % 3759368448 19.46 % 143446488 0.74 %
Base Counts Overall T 15196804430 39.33 % 8845960222 45.78 % 6350844208 32.87 %
Base Counts Overall N 521547927 1.35 % 191385322 0.99 % 330162605 1.71 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9954533131195679
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 181879485



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422975.43.mapq.png



Read Length

Read Length Reads
100 191294277
100 191294277



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422975.43.isize.png