/EXTERNAL DEEP/K006119_K006120_K006121_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422976.43

BACK

SAMPLE K006119_K006120_K006121_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422976.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 368911114 100.00 % 184455557 100.00 % 184455557 100.00 %
General Reads 356635301 96.67 % 178889240 96.98 % 177746061 96.36 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5649816 1.53 % 2848064 1.54 % 2801752 1.52 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6625997 1.80 % 2718253 1.47 % 3907744 2.12 %
Bisulfite_reads C2T 186739977 50.62 % 93657117 50.77 % 93082860 50.46 %
Bisulfite_reads G2A 175545140 47.58 % 88080187 47.75 % 87464953 47.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 126639230
Average Unique 68.66 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13641750992 36.61 % 5356127155 28.75 % 8285623837 44.47 %
Base Counts Overall C 4919997615 13.20 % 504196439 2.71 % 4415801176 23.70 %
Base Counts Overall G 5089724952 13.66 % 4477716370 24.03 % 612008582 3.29 %
Base Counts Overall T 13230915027 35.51 % 8107308605 43.52 % 5123606422 27.50 %
Base Counts Overall N 377633928 1.01 % 184662688 0.99 % 192971240 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9782425951809974
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 147804562



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422976.43.mapq.png



Read Length

Read Length Reads
100 184455557
100 184455557



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422976.43.isize.png