/EXTERNAL DEEP/K006119_K006120_K006121_3_lane_gembs/43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422977.43

BACK

SAMPLE K006119_K006120_K006121_3_lane_gembs LANE 43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422977.43

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 362979324 100.00 % 181489662 100.00 % 181489662 100.00 %
General Reads 358510268 98.77 % 179752231 99.04 % 178758037 98.49 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1150629 0.32 % 577137 0.32 % 573492 0.32 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3318427 0.91 % 1160294 0.64 % 2158133 1.19 %
Bisulfite_reads C2T 184566209 50.85 % 92529925 50.98 % 92036284 50.71 %
Bisulfite_reads G2A 175094688 48.24 % 87799443 48.38 % 87295245 48.10 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 153329968
Average Unique 84.48 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14472622111 39.48 % 6056490895 33.04 % 8416131216 45.91 %
Base Counts Overall C 3674715869 10.02 % 146149433 0.80 % 3528566436 19.25 %
Base Counts Overall G 3677342179 10.03 % 3539971849 19.31 % 137370330 0.75 %
Base Counts Overall T 14464256653 39.45 % 8406062780 45.86 % 6058193873 33.05 %
Base Counts Overall N 371974912 1.01 % 181780905 0.99 % 190194007 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9957151141405054
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 174070744



Mapping Quality

Mapping Quality Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422977.43.mapq.png



Read Length

Read Length Reads
100 181489662
100 181489662



Insert Size Plot

Insert Size Histogram
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422977.43.isize.png