/EXTERNAL DEEP/K006119_K006120_K006121_3_lane_gembs

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SAMPLE K006119_K006120_K006121_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1114478992 100.00 % 557239496 100.00 % 557239496 100.00 %
General Reads 1091629816 97.95 % 548124932 98.36 % 543504884 97.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8004440 0.72 % 4031869 0.72 % 3972571 0.71 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14844736 1.33 % 5082695 0.91 % 9762041 1.75 %
Bisulfite_reads C2T 565069606 50.70 % 283691222 50.91 % 281378384 50.50 %
Bisulfite_reads G2A 534564650 47.97 % 268465579 48.18 % 266099071 47.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 440201116
Average Unique 79.00 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43326049519 38.49 % 17784736767 31.60 % 25541312752 45.38 %
Base Counts Overall C 12403313729 11.02 % 802235140 1.43 % 11601078589 20.61 %
Base Counts Overall G 12669882067 11.26 % 11777056667 20.93 % 892825400 1.59 %
Base Counts Overall T 42891976110 38.11 % 25359331607 45.06 % 17532644503 31.15 %
Base Counts Overall N 1271156767 1.13 % 557828915 0.99 % 713327852 1.27 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9833007436416661
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 503754791



Mapping Quality

Mapping Quality Histogram
K006119_K006120_K006121_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006119_K006120_K006121_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422976.43
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422975.43
43_Hm05.Bisulfite-Seq.DNA_methylation.EGAX00001422977.43