/EXTERNAL CREST/mapping_coverage/K006442_1_lane_gembs
BACK
SAMPLE K006442_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1639731878 |
100% |
153305429887 |
100% |
| Mapped |
1590341792 |
96.99 % |
148317031201 |
96.75 % |
| Passed |
671252969 |
40.94 % |
55489060078 |
36.20 % |
| NotPassed |
919088823 |
56.05 % |
92827971123 |
60.55 % |
| |
|
|
|
|
| LowMAPQ |
478653746 |
29.19 % |
48344028346 |
31.53 % |
| MateUnmapped |
49390086 |
3.01 % |
4988398686 |
3.25 % |
| Duplicate |
94255240 |
5.75 % |
9519779240 |
6.21 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
261152 |
0.02 % |
26376352 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
345918685 |
21.10 % |
34937787185 |
22.79 % |
| Unmapped |
49390086 |
3.01 % |
4988398686 |
3.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
67730648884 |
100% |
| Passed |
51949760028 |
76.70 % |
| Trimmed |
2757321464 |
4.07 % |
| Clipped |
1485336101 |
2.19 % |
| Overlapping |
10756252705 |
15.88 % |
| LowQuality |
781978586 |
1.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |