/EXTERNAL CREST/methylation/K006442_1_lane_gembs

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SAMPLE K006442_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25852994 14398658 55.69 %
NonRefCpG 474974 81959 17.26 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006442_1_lane_gembs_coverage_refCpG.png ./IMG//K006442_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006442_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006442_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006442_1_lane_gembs_quality_refcpg.png ./IMG//K006442_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006442_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 14514395 29.36 % 9458990 27.18 % 360659 43.07 % 81118 27.83 %
Intermediate (0.3-0.7) 18130660 36.68 % 11824208 33.98 % 285394 34.08 % 107153 36.76 %
Methylated (0.7-1) 16788084 33.96 % 13518356 38.84 % 191342 22.85 % 103223 35.41 %
Median Methylation 0.530 0.590 0.380 0.550