/EXTERNAL CREST/mapping_coverage/K006441_1_lane_gembs
BACK
SAMPLE K006441_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1724890002 |
100% |
161893045171 |
100% |
| Mapped |
1651387383 |
95.74 % |
154469280652 |
95.41 % |
| Passed |
609036800 |
35.31 % |
49191871769 |
30.39 % |
| NotPassed |
1042350583 |
60.43 % |
105277408883 |
65.03 % |
| |
|
|
|
|
| LowMAPQ |
477433062 |
27.68 % |
48220739262 |
29.79 % |
| MateUnmapped |
73502619 |
4.26 % |
7423764519 |
4.59 % |
| Duplicate |
82254008 |
4.77 % |
8307654808 |
5.13 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
288208 |
0.02 % |
29109008 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
482375305 |
27.97 % |
48719905805 |
30.09 % |
| Unmapped |
73502619 |
4.26 % |
7423764519 |
4.59 % |
Base Level Counts
| Bases |
# |
% |
| Total |
61451972269 |
100% |
| Passed |
46018051806 |
74.88 % |
| Trimmed |
2441036771 |
3.97 % |
| Clipped |
1698523877 |
2.76 % |
| Overlapping |
10561576623 |
17.19 % |
| LowQuality |
732783192 |
1.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |