/EXTERNAL CREST/mapping_coverage/K006469_1_lane_gembs
BACK
SAMPLE K006469_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
229130869 |
100% |
14123219056 |
100% |
| Mapped |
229130869 |
100.00 % |
14123219056 |
100.00 % |
| Passed |
172524161 |
75.30 % |
10733226574 |
76.00 % |
| NotPassed |
56606708 |
24.70 % |
3389992482 |
24.00 % |
| |
|
|
|
|
| LowMAPQ |
33564282 |
14.65 % |
3389992482 |
24.00 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
23042426 |
10.06 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
8720126385 |
100% |
| Passed |
7987760266 |
91.60 % |
| Trimmed |
397639343 |
4.56 % |
| Clipped |
275212101 |
3.16 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
59514675 |
0.68 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |