/EXTERNAL CREST/methylation/K006469_1_lane_gembs

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SAMPLE K006469_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 22871179 204569 0.89 %
NonRefCpG 994531 413 0.04 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006469_1_lane_gembs_coverage_refCpG.png ./IMG//K006469_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006469_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006469_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006469_1_lane_gembs_quality_refcpg.png ./IMG//K006469_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006469_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 13108605 36.09 % 305508 21.02 % 675583 46.57 % 4555 38.01 %
Intermediate (0.3-0.7) 13967930 38.46 % 462823 31.85 % 523058 36.06 % 4299 35.87 %
Methylated (0.7-1) 9244569 25.45 % 685012 47.13 % 252062 17.38 % 3131 26.12 %
Median Methylation 0.440 0.670 0.330 0.420