/EXTERNAL CREST/mapping_coverage/K006447_1_lane_gembs
BACK
SAMPLE K006447_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1824269155 |
100% |
171297488107 |
100% |
| Mapped |
1734501572 |
95.08 % |
162230962224 |
94.71 % |
| Passed |
675400525 |
37.02 % |
55261756477 |
32.26 % |
| NotPassed |
1059101047 |
58.06 % |
106969205747 |
62.45 % |
| |
|
|
|
|
| LowMAPQ |
493663230 |
27.06 % |
49859986230 |
29.11 % |
| MateUnmapped |
89767583 |
4.92 % |
9066525883 |
5.29 % |
| Duplicate |
90787267 |
4.98 % |
9169513967 |
5.35 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
275558 |
0.02 % |
27831358 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
474374992 |
26.00 % |
47911874192 |
27.97 % |
| Unmapped |
89767583 |
4.92 % |
9066525883 |
5.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68156818788 |
100% |
| Passed |
51882573464 |
76.12 % |
| Trimmed |
2721611370 |
3.99 % |
| Clipped |
1858409390 |
2.73 % |
| Overlapping |
11036652921 |
16.19 % |
| LowQuality |
657571643 |
0.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |