/EXTERNAL CREST/methylation/K006447_1_lane_gembs

BACK

SAMPLE K006447_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25766876 16479540 63.96 %
NonRefCpG 531032 114721 21.60 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006447_1_lane_gembs_coverage_refCpG.png ./IMG//K006447_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006447_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006447_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006447_1_lane_gembs_quality_refcpg.png ./IMG//K006447_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006447_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9240713 18.87 % 6121651 16.59 % 338031 36.77 % 61752 17.85 %
Intermediate (0.3-0.7) 11348710 23.17 % 7056345 19.13 % 254600 27.70 % 81962 23.69 %
Methylated (0.7-1) 28382666 57.96 % 23716182 64.28 % 326582 35.53 % 202274 58.46 %
Median Methylation 0.770 0.810 0.490 0.770