/EXTERNAL CREST/K006446_1_lane_gembs/JKU008.Bisulfite-Seq.DNA_Methylation.JGAX00000011775.JKU008_WGBS
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1910357120 | 100.00 % | 955178560 | 100.00 % | 955178560 | 100.00 % |
| General Reads | 1794046607 | 93.91 % | 914457374 | 95.74 % | 879589233 | 92.09 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12888774 | 0.67 % | 6356500 | 0.67 % | 6532274 | 0.68 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 103421739 | 5.41 % | 34364686 | 3.60 % | 69057053 | 7.23 % |
| Bisulfite_reads C2T | 923750909 | 48.35 % | 470810455 | 49.29 % | 452940454 | 47.42 % |
| Bisulfite_reads G2A | 883184472 | 46.23 % | 450003419 | 47.11 % | 433181053 | 45.35 % |
| Concept | Value |
|---|---|
| Unique Fragments | 405566101 |
| Average Unique | 42.46 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 70402142834 | 36.13 % | 43608942840 | 44.76 % | 26793199994 | 27.50 % |
| Base Counts Overall C | 26493846887 | 13.60 % | 23436851440 | 24.06 % | 3056995447 | 3.14 % |
| Base Counts Overall G | 27613067524 | 14.17 % | 2119060145 | 2.17 % | 25494007379 | 26.17 % |
| Base Counts Overall T | 68406585152 | 35.11 % | 27299770580 | 28.02 % | 41106814572 | 42.19 % |
| Base Counts Overall N | 1940783843 | 1.00 % | 963588115 | 0.99 % | 977195728 | 1.00 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9857929795306292 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 537691746 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 955178560 |
| 101 | 955178560 |
| Insert Size Histogram |
|---|
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