/EXTERNAL CREST/K006446_1_lane_gembs

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SAMPLE K006446_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1910357120 100.00 % 955178560 100.00 % 955178560 100.00 %
General Reads 1794046607 93.91 % 914457374 95.74 % 879589233 92.09 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12888774 0.67 % 6356500 0.67 % 6532274 0.68 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 103421739 5.41 % 34364686 3.60 % 69057053 7.23 %
Bisulfite_reads C2T 923750909 48.35 % 470810455 49.29 % 452940454 47.42 %
Bisulfite_reads G2A 883184472 46.23 % 450003419 47.11 % 433181053 45.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 405566101
Average Unique 42.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70402142834 36.13 % 43608942840 44.76 % 26793199994 27.50 %
Base Counts Overall C 26493846887 13.60 % 23436851440 24.06 % 3056995447 3.14 %
Base Counts Overall G 27613067524 14.17 % 2119060145 2.17 % 25494007379 26.17 %
Base Counts Overall T 68406585152 35.11 % 27299770580 28.02 % 41106814572 42.19 %
Base Counts Overall N 1940783843 1.00 % 963588115 0.99 % 977195728 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9857929795306292
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 537691746



Mapping Quality

Mapping Quality Histogram
K006446_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006446_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
JKU008.Bisulfite-Seq.DNA_Methylation.JGAX00000011775.JKU008_WGBS